Peer-reviewed

IN PROGRESS

Alegado RA and Drew J (Eds.) Indigenous Knowledge and Marine Relationships: Towards an Ethic of Caring for the Sea. Boca Raton, FL: CRC Press, accepted contract.

McGregor DP, Wiebe SM, Oceana Francis, Baker CMK, Bremer L, Alegado RA, Puniwai N. (2022) “Energy As Deity: Kahoʻolawe and Aloha ʻĀina Futures” in Rachel George, Jen Belman and Sarah Marie Wiebe (Eds). Seascape Stories: Decolonial Water Relations. Victoria, BC: University of British Columbia Press, in revision.

2024

Jennings LL, Jones K, Taitingfong R, Martinez A, David-Chavez D, Alegado RA, Tofighi-Niaki A, Maldonado J, Thomas B, Dye D, Weber J, Spellman K, Ketchum S, Duerr R, Johnson N, Balch J, Russo Carroll S. (2024) Earth Data Relations: Applying Indigenous Data Governance towards responsible Open Earth Systems Science within the National Ecological Observatory Network. Nature Communications, in press.

Hintzen K, Ascuncion B, Tamanaha M, Hui Mālama Loko Iʻa, Alegado RA§ (2024) A practitioner-led approach to a climate change needs assessment of Native Hawaiian aquaculture. Oceanography, 37(1):100–101.

Kaczor K, Alegado RA, Hintzen K, Ching L, Lieberman M, Chang S, Nakano E, Sy A, Horio D, Tam K, Nerurkar VR, Smyth A, Collins A, Fallon K, Focazio P, and Kreisler S. (2024) Rising together in response to the COVID-19 pandemic. Oceanography 37(1):12–18.

2023

Kane HH§, Choy CA, Bruno BC, Tachera DK, Keliipuleole K, Wong-Ala JATK, Burns JHR, Kapono CA, Pasco KH, Steward K, and Alegado RA§. (2023) Hoʻokele ka waʻa: Recalibrating the sail plan for Native Hawaiians and Pacific Islanders in the ocean sciences. Oceanography 36 (4): 35-43.

Leonard K§, David-Chavez D, Smiles D, Jennings L, Alegado RA, Tsinnajinnie L, Manitowabi J, Arsenault R, Begay RL, Kagawa-Viviani A, David DD, von Uitregt V, Pichette H, Liboiron M, Moggridge B, Russo Carroll S, Tsosie RL, Gomez A (2023) “Water Back: A Review of Reclamation, Rematriation, and Restoration for Indigenous Water Sovereignty” Water Alternatives Reviews, 16(2) 1.

Bader AC§, Van Zuylen EM, Handsley-Davis M, Alegado RA, Amber Benezra A, Pollet RM, Ehau-Taumaunu H, Weyrich LS, Anderson MZ§ (2023) A relational framework guides best practices in microbiome research with Indigenous communities. Nature Microbiology 8:1768-1776.

Alegado RA§, Hintzen KD, Tamanaha M, Asuncion B, Bottjer-Wilson D. (2023) Kūlana Noiʻi: a kanaka ʻōiwi-centered indigenist axiology for conducting research with communities in Stephens J and Pipe L (Eds). IGNITE: A Justice-Forward Approach to Decolonizing Higher Education through Space, Place, and Culture. Wilmington, DE: Vernon Press.

2022

Chen, CY §, Kahanamoku SS §, Tripati A§, Alegado RA §, Morris VR §, Andrade K, Hosbey J. (2022) Meta-Research: Systemic racial disparities in funding rates at the National Science Foundation eLife 11:e83071

Freckelton ML, Nedved BT, Cai Y-S, Cao S, Turano H, Alegado RA, Hadfield MG§. (2022) Bacterial lipopolysaccharide induces settlement and metamorphosis in a marine larva. Proceedings of the National Academy of Science, 119 (18), e2200795119.

2021

Nakahara BA, Demopoulos AWJ§, Rii YM, Alegado RA, Fraiola K, Smith CR. (2021) Novel introduced mangrove habitats support distinct megafaunal communities along the coast of Molokaʻi, Hawaiʻi. Pacific Science, 72(2) 205-223.

Mateo-Matriano D, Alegado RA, Conaco CC§. (2021) Detection of Horizontal Gene Transfer in the Genome of Salpingoeca rosetta. Scientific Reports 11 (1), 1-11.  

2020

McGregor DP§, Aluli NE, Alegado RA. (2020) Hulihia: Visioning and Planning for our Islands and Communities in the Wake of COVID-19: Lessons from Aloha ʻĀina Activism in The Value of Hawaiʻi III: Hulihia, Honolulu: University of Hawaiʻi Press and Center for Biographical Research.

Winter KB§, Rii Y, Reppun F, Hintzen K, Alegado RA, Bowen BW, Bremer LL, Coffman M, Deenik JL, Donahue MJ, Falinksi KA, Frank KL, Franklin EC, Kurashima N, Lincoln NK, Madin E,  McManus MA, Nelson C, Okano R, Olegario A, Oleson K, Pascua P, Price MR, Rivera MAJ, Rodgers K, Sabine C, Smith CM, Ticktin T, Hewitt A, Kaluhiwa R, Cypher M, Leong JA, Thomas B, Kekuewa K, Kukea-Shultz K, Kawelo H, Kotubetey K, Neilson B, Tonimoto J, Lee T, Toonen RJ. (2020) Collaborative research to inform adaptive co-management: A framework for the Heʻeia National Estuarine Research Reserve. Ecology and Society, 25(4):15.

Winter K§, Lincoln N, Berkes F, Alegado RA,  Kurashima N, Frank K, Pascua P, Rii Y, Reppun F, Knapp I, McClatchey W, Ticktin T, Smith C, Franklin E , Oleson K, Price M,  McManus MA, Donahue M,  Rodgers K, Bowen B, Nelson C, Thomas B, Leong J,  Madin E, Rivera MA, Falinski K, Bremer L, Deenik J , Gon III S, Neilson B, Okano R, Olegario A, Nyberg B, Kawelo AH, Kotubetey K, Kukea-Shultz JK, Toonen R. (2020) Eco-mimicry in Indigenous Resource Management: Optimizing ecosystem services to achieve resource abundance with examples from Hawaii. Ecology and Society. 25(2).

2019

Shuler C, Amato DW, Gibson V, Baker L, Olguin AN, Dulai H, Smith CM, Alegado RA (2019) Assessment of Terrigenous Nutrient Loading to Coastal Ecosystems Along a Human Land-Use Gradient, Tutuila, American Samoa. Hydrology, 6(1):18.

Mohlenkamp P, Beebe CK, McManus MA, Kawelo AH, Kotubetey K, Lopez-Guzman M, Nelson CE, Alegado RA§. (2019) Kū Hou Kuapā: Cultural Restoration Improves Water Budget and Water Quality Dynamics in Heʻeia Fishpond. Journal of Sustainability: Special Issue “New Approaches to Fisheries and Aquaculture Sustainability”, 11(1):161

2018

  Hynson N§, Frank K, Alegado R, Amend A, Arif M, Bennett G, Jani A, Medeiros M, Mileyko Y, Nelson C, Nguyen N, Nigro O, Prisic S, Takagi D, Wilson S, Yew J, Shin S. (2018) Synergy among microbiota and their hosts: leveraging the Hawaiian archipelago and local collaborative networks to address pressing questions in microbiome research. mSystems, 3:e00159-17.

Lynch J§ and Alegado RA§. (2017) Spheres of hope, orbs of doom: the good and bad of outer membrane vesicles in interspecies dynamics. Journal of Bacteriology, 17 April.

2017

McCoy D, McManus MA, Kotubetey K, Kawelo AH, Young C, D’Andrea B, Ruttenberg KC, Alegado RA§. (2017) Large-scale climatic effects on a traditional Hawaiian fishpond. PLoS One, 16 Nov, 12(11):e0187951.

Xie G, Wang X, Ji J, Zhao A, Yan J, Chen W, Jiang R, Huang F, Zhang Y, Lei S, Ge K, Zheng X, Alegado RA, Liu J, Liu P, Nicholson J, Jia W, Jia W§. (2017) Sex-dependent effects on gut microbiota regulate carcinogenic outcomes. Scientific Reports, Mar 27;7:45232.

2016

Baker LJ, Alegado RA, Kemp PF. (2016) Response of diatom-associated bacteria to host growth state, nutrient concentrations, and viral host infection in a tripartite model system. Environmental Microbiology Reports, 8(5):917-927

Xie G, Wang X, Liu P, Chen W, Hernandez BY, Alegado RA, Dong B, Li D and Wei J. (2016) Alterations in gut microbial ecology and progression of liver pathology. Oncotarget, 7(15): 19355.

2014

Beemelmanns CB, Woznica SA, Alegado RA, King N, Clardy J. (2014). Synthesis of the rosette-inducing factor RIF-1 and analogs. Journal of the American Chemical Society, 136(29):10210-3.

Alegado, RA and King N. Bacterial influences on animal origins. (2014) Cold Spring Harbor Perspectives in Biology

2012

Alegado RA*, Brown LW*, Cao S, Dermenjian RK, Zuzow R, Fairclough SR, Clardy J, King N. (2012) A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals. eLife 1:e00013

• Selected by F1000

Alegado RA§, Grabenstatter JD, Zuzow R, Morris A, Huang S, Summons RE, King N§. (2012) Algoriphagus machipongonensis sp. nov., co-isolated with a colonial choanoflagellate. International Journal of Systematic and Evolutionary Microbiology (ijs.0.038646-0; published ahead of print February 24, 2012, doi:10.1099/ijs.0.038646-0)

2011

Dayel MJ, Alegado RA*, Fairclough SR*, Levin T, Nichols SA, McDonald K, King N§. (2011) Cell differentiation and morphogenesis in the colony-forming choanoflagellate Salpingoeca rosetta. Developmental Biology 357 (1): 73-82.

Alegado RA§, Ferriera S, Nusbaum C, Young SK, Zeng Q, Imamovic A, Fairclough SR, King N. (2011) Complete genome sequence of Algoriphagus sp. PR1, Bacterial Prey of a Colony-Forming Choanoflagellate. Journal of Bacteriology 193(6): 1485-1486.

Alegado RA, Chin, CY, Monack D, Tan MW§. (2011) The two-component sensor kinase KdpD is required for Salmonella typhimurium colonization of Caenorhabditis elegans and survival in macrophages. Cellular Microbiology 13(10): 1618-1637

2008

Alegado RA and Tan MW§. (2008) Resistance to antimicrobial peptides contributes to persistence of Salmonella typhimurium in the C. elegans intestine. Cellular Microbiology 10(6): 1259-1273.

2003

Alegado, RA and King N. Bacterial influences on animal origins. (2014) Cold Spring Harbor Perspectives in Biology

OTHER SCHOLARLY WORKS

Menatti L, Waterton E, Alegado RA, Lee E, Smiles ND, Waterman T, Liboiron M (2024). Book Review Forum: Pollution is Colonialism. Landscape Research,49(3):1-2.

Alegado RA. “Rosanna ʻAnolani Alegado” in Kappel, E.S., B. Cuker, C. Garza, D. Gibson, C. Martinez, W.F. Todd, and C. Xu, eds. 2023. Building Diversity, Equity, and Inclusion in the Ocean Sciences Autobiographical Sketches: A Supplement to the December 2023 Oceanography Special Issue. Oceanography 36(4).

Aoude IG, McGregor DM, Alegado RA. (2022). A Tribute to Dr. Dean Alegado. Alon: Journal for Filipinx American and Diasporic Studies, 2(3), 331-346.

Alegado RA. (2022). Dean Tiburcio Alegado in Nadal K, Tintiangco-Cubales A, and David EJR (Eds). The SAGE Encyclopedia of Filipina/x/o American Studies. Thousand Oaks, CA: SAGE Publications.

Alegado RA. (2019). Opponents of the Thirty Meter Telescope fight the process, not science. Nature, 572(7767), 7.